RP20_CCG002974 protein (Aedes albopictus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RP20_CCG002974

Ubiquitinyl hydrolase 1. (1256 aa)

Predicted Functional Partners:

RP20_CCG024270

0.889

RP20_CCG012419

0.688

RP20_CCG017515

0.628

RP20_CCG005022

0.624

RP20_CCG006876

0.622

RP20_CCG002118

0.621

RP20_CCG002542

0.619

RP20_CCG002644

0.616

RP20_CCG016285

0.594

RP20_CCG013336

0.577

Your Current Organism:

Aedes albopictus

NCBI taxonomy Id: 7160
Other names: A. albopictus, Asian tiger mosquito, Stegomyia albopicta, forest day mosquito

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RP20_CCG002118	RP20_CCG002644	A0A182G3H1	A0A023EM32	Uncharacterized protein.	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.845
RP20_CCG002118	RP20_CCG002974	A0A182G3H1	A0A182G4U8	Uncharacterized protein.	Ubiquitinyl hydrolase 1.	0.621
RP20_CCG002118	RP20_CCG005022	A0A182G3H1	A0A182G871	Uncharacterized protein.	39S ribosomal protein L3, mitochondrial.	0.621
RP20_CCG002118	RP20_CCG006876	A0A182G3H1	A0A182GUQ2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.654
RP20_CCG002118	RP20_CCG013336	A0A182G3H1	A0A182GP93	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.708
RP20_CCG002118	RP20_CCG016285	A0A182G3H1	A0A182GV41	Uncharacterized protein.	39S ribosomal protein L4, mitochondrial.	0.550
RP20_CCG002118	RP20_CCG024270	A0A182G3H1	A0A182H8U1	Uncharacterized protein.	Uncharacterized protein.	0.890
RP20_CCG002542	RP20_CCG002644	A0A182G454	A0A023EM32	39S ribosomal protein L21, mitochondrial.	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.986
RP20_CCG002542	RP20_CCG002974	A0A182G454	A0A182G4U8	39S ribosomal protein L21, mitochondrial.	Ubiquitinyl hydrolase 1.	0.619
RP20_CCG002542	RP20_CCG005022	A0A182G454	A0A182G871	39S ribosomal protein L21, mitochondrial.	39S ribosomal protein L3, mitochondrial.	0.997
RP20_CCG002542	RP20_CCG006876	A0A182G454	A0A182GUQ2	39S ribosomal protein L21, mitochondrial.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.998
RP20_CCG002542	RP20_CCG013336	A0A182G454	A0A182GP93	39S ribosomal protein L21, mitochondrial.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.996
RP20_CCG002542	RP20_CCG016285	A0A182G454	A0A182GV41	39S ribosomal protein L21, mitochondrial.	39S ribosomal protein L4, mitochondrial.	0.994
RP20_CCG002542	RP20_CCG024270	A0A182G454	A0A182H8U1	39S ribosomal protein L21, mitochondrial.	Uncharacterized protein.	0.980
RP20_CCG002644	RP20_CCG002118	A0A023EM32	A0A182G3H1	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.845
RP20_CCG002644	RP20_CCG002542	A0A023EM32	A0A182G454	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	39S ribosomal protein L21, mitochondrial.	0.986
RP20_CCG002644	RP20_CCG002974	A0A023EM32	A0A182G4U8	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	Ubiquitinyl hydrolase 1.	0.616
RP20_CCG002644	RP20_CCG005022	A0A023EM32	A0A182G871	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	39S ribosomal protein L3, mitochondrial.	0.945
RP20_CCG002644	RP20_CCG006876	A0A023EM32	A0A182GUQ2	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.973
RP20_CCG002644	RP20_CCG016285	A0A023EM32	A0A182GV41	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	39S ribosomal protein L4, mitochondrial.	0.960