RP20_CCG003031 protein (Aedes albopictus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RP20_CCG003031

HTH cro/C1-type domain-containing protein. (147 aa)

Predicted Functional Partners:

RP20_CCG006805

0.970

RP20_CCG016378

0.949

RP20_CCG002644

0.931

RP20_CCG002052

0.918

RP20_CCG012741

0.915

RP20_CCG028095

0.913

RP20_CCG017334

0.913

RP20_CCG017139

0.912

RP20_CCG004005

0.907

RP20_CCG004030

0.903

Your Current Organism:

Aedes albopictus

NCBI taxonomy Id: 7160
Other names: A. albopictus, Asian tiger mosquito, Stegomyia albopicta, forest day mosquito

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RP20_CCG002052	RP20_CCG002644	A0A182G3D3	A0A023EM32	Uncharacterized protein.	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	0.999
RP20_CCG002052	RP20_CCG003031	A0A182G3D3	A0A182G4Y3	Uncharacterized protein.	HTH cro/C1-type domain-containing protein.	0.918
RP20_CCG002052	RP20_CCG004005	A0A182G3D3	A0A182G6G8	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
RP20_CCG002052	RP20_CCG004030	A0A182G3D3	A0A023ED66	Uncharacterized protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
RP20_CCG002052	RP20_CCG006805	A0A182G3D3	A0A182GB86	Uncharacterized protein.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
RP20_CCG002052	RP20_CCG012741	A0A182G3D3	A0A023EH68	Uncharacterized protein.	Putative u3 small nucleolar ribonucleoprotein snornp component.	0.998
RP20_CCG002052	RP20_CCG016378	A0A182G3D3	A0A182GVB3	Uncharacterized protein.	40S ribosomal protein S20.	0.999
RP20_CCG002052	RP20_CCG017139	A0A182G3D3	A0A182GWM0	Uncharacterized protein.	Uncharacterized protein.	0.999
RP20_CCG002052	RP20_CCG017334	A0A182G3D3	A0A182GWZ4	Uncharacterized protein.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
RP20_CCG002052	RP20_CCG028095	A0A182G3D3	A0A023ELY8	Uncharacterized protein.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
RP20_CCG002644	RP20_CCG002052	A0A023EM32	A0A182G3D3	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
RP20_CCG002644	RP20_CCG003031	A0A023EM32	A0A182G4Y3	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	HTH cro/C1-type domain-containing protein.	0.931
RP20_CCG002644	RP20_CCG004005	A0A023EM32	A0A182G6G8	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
RP20_CCG002644	RP20_CCG004030	A0A023EM32	A0A023ED66	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
RP20_CCG002644	RP20_CCG006805	A0A023EM32	A0A182GB86	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
RP20_CCG002644	RP20_CCG012741	A0A023EM32	A0A023EH68	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	Putative u3 small nucleolar ribonucleoprotein snornp component.	0.996
RP20_CCG002644	RP20_CCG016378	A0A023EM32	A0A182GVB3	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S20.	0.999
RP20_CCG002644	RP20_CCG017139	A0A023EM32	A0A182GWM0	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
RP20_CCG002644	RP20_CCG017334	A0A023EM32	A0A182GWZ4	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
RP20_CCG002644	RP20_CCG028095	A0A023EM32	A0A023ELY8	Putative ribosomal protein s2; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999