RP20_CCG005249 protein (Aedes albopictus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RP20_CCG005249

Fcf2 domain-containing protein. (130 aa)

Predicted Functional Partners:

RP20_CCG027579

0.978

RP20_CCG022351

0.966

RP20_CCG016140

0.962

RP20_CCG005065

0.946

RP20_CCG022629

0.945

RP20_CCG024813

0.943

RP20_CCG011134

0.937

RP20_CCG002709

0.936

RP20_CCG027265

0.936

RP20_CCG012741

0.923

Your Current Organism:

Aedes albopictus

NCBI taxonomy Id: 7160
Other names: A. albopictus, Asian tiger mosquito, Stegomyia albopicta, forest day mosquito

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RP20_CCG002709	RP20_CCG005065	A0A182G4G1	A0A182G8A3	Uncharacterized protein.	NUC153 domain-containing protein.	0.993
RP20_CCG002709	RP20_CCG005249	A0A182G4G1	A0A182G8M2	Uncharacterized protein.	Fcf2 domain-containing protein.	0.936
RP20_CCG002709	RP20_CCG011134	A0A182G4G1	A0A182GPJ3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.996
RP20_CCG002709	RP20_CCG012741	A0A182G4G1	A0A023EH68	Uncharacterized protein.	Putative u3 small nucleolar ribonucleoprotein snornp component.	0.995
RP20_CCG002709	RP20_CCG016140	A0A182G4G1	A0A182GUU0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
RP20_CCG002709	RP20_CCG022351	A0A182G4G1	A0A182H5V1	Uncharacterized protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.998
RP20_CCG002709	RP20_CCG022629	A0A182G4G1	A0A182H6A8	Uncharacterized protein.	Uncharacterized protein.	0.999
RP20_CCG002709	RP20_CCG024813	A0A182G4G1	A0A182H9N7	Uncharacterized protein.	Uncharacterized protein.	0.977
RP20_CCG002709	RP20_CCG027265	A0A182G4G1	A0A182HDK6	Uncharacterized protein.	Uncharacterized protein.	0.997
RP20_CCG002709	RP20_CCG027579	A0A182G4G1	A0A182HE04	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
RP20_CCG005065	RP20_CCG002709	A0A182G8A3	A0A182G4G1	NUC153 domain-containing protein.	Uncharacterized protein.	0.993
RP20_CCG005065	RP20_CCG005249	A0A182G8A3	A0A182G8M2	NUC153 domain-containing protein.	Fcf2 domain-containing protein.	0.946
RP20_CCG005065	RP20_CCG011134	A0A182G8A3	A0A182GPJ3	NUC153 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.987
RP20_CCG005065	RP20_CCG012741	A0A182G8A3	A0A023EH68	NUC153 domain-containing protein.	Putative u3 small nucleolar ribonucleoprotein snornp component.	0.972
RP20_CCG005065	RP20_CCG016140	A0A182G8A3	A0A182GUU0	NUC153 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
RP20_CCG005065	RP20_CCG022351	A0A182G8A3	A0A182H5V1	NUC153 domain-containing protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.995
RP20_CCG005065	RP20_CCG022629	A0A182G8A3	A0A182H6A8	NUC153 domain-containing protein.	Uncharacterized protein.	0.998
RP20_CCG005065	RP20_CCG024813	A0A182G8A3	A0A182H9N7	NUC153 domain-containing protein.	Uncharacterized protein.	0.985
RP20_CCG005065	RP20_CCG027265	A0A182G8A3	A0A182HDK6	NUC153 domain-containing protein.	Uncharacterized protein.	0.987
RP20_CCG005065	RP20_CCG027579	A0A182G8A3	A0A182HE04	NUC153 domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.993