RP20_CCG005697 protein (Aedes albopictus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RP20_CCG005697

BHLH domain-containing protein. (1185 aa)

Predicted Functional Partners:

RP20_CCG015172

0.954

RP20_CCG020355

0.954

RP20_CCG020159

0.902

MED15

0.804

RP20_CCG026423

0.721

RP20_CCG008540

0.697

RP20_CCG027398

0.694

RP20_CCG023199

0.685

RP20_CCG002845

0.667

RP20_CCG014023

0.667

Your Current Organism:

Aedes albopictus

NCBI taxonomy Id: 7160
Other names: A. albopictus, Asian tiger mosquito, Stegomyia albopicta, forest day mosquito

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MED15	RP20_CCG005697	A0A182GWN0	A0A182G9E1	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	BHLH domain-containing protein.	0.804
RP20_CCG002845	RP20_CCG005697	A0A182G4N4	A0A182G9E1	Peptidase_S8 domain-containing protein.	BHLH domain-containing protein.	0.667
RP20_CCG002845	RP20_CCG015172	A0A182G4N4	A0A182GSW8	Peptidase_S8 domain-containing protein.	SSD domain-containing protein.	0.400
RP20_CCG002845	RP20_CCG020355	A0A182G4N4	A0A182H2F2	Peptidase_S8 domain-containing protein.	SSD domain-containing protein.	0.400
RP20_CCG005697	MED15	A0A182G9E1	A0A182GWN0	BHLH domain-containing protein.	Mediator of RNA polymerase II transcription subunit 15; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.804
RP20_CCG005697	RP20_CCG002845	A0A182G9E1	A0A182G4N4	BHLH domain-containing protein.	Peptidase_S8 domain-containing protein.	0.667
RP20_CCG005697	RP20_CCG008540	A0A182G9E1	A0A182GEJ1	BHLH domain-containing protein.	Uncharacterized protein.	0.697
RP20_CCG005697	RP20_CCG014023	A0A182G9E1	A0A182GQL9	BHLH domain-containing protein.	Peptidase_S8 domain-containing protein.	0.667
RP20_CCG005697	RP20_CCG015172	A0A182G9E1	A0A182GSW8	BHLH domain-containing protein.	SSD domain-containing protein.	0.954
RP20_CCG005697	RP20_CCG020159	A0A182G9E1	A0A182H213	BHLH domain-containing protein.	Uncharacterized protein.	0.902
RP20_CCG005697	RP20_CCG020355	A0A182G9E1	A0A182H2F2	BHLH domain-containing protein.	SSD domain-containing protein.	0.954
RP20_CCG005697	RP20_CCG023199	A0A182G9E1	A0A182H774	BHLH domain-containing protein.	Uncharacterized protein.	0.685
RP20_CCG005697	RP20_CCG026423	A0A182G9E1	A0A182HC86	BHLH domain-containing protein.	BHLH domain-containing protein.	0.721
RP20_CCG005697	RP20_CCG027398	A0A182G9E1	A0A182HDQ9	BHLH domain-containing protein.	Uncharacterized protein.	0.694
RP20_CCG008540	RP20_CCG005697	A0A182GEJ1	A0A182G9E1	Uncharacterized protein.	BHLH domain-containing protein.	0.697
RP20_CCG008540	RP20_CCG015172	A0A182GEJ1	A0A182GSW8	Uncharacterized protein.	SSD domain-containing protein.	0.474
RP20_CCG008540	RP20_CCG020355	A0A182GEJ1	A0A182H2F2	Uncharacterized protein.	SSD domain-containing protein.	0.474
RP20_CCG014023	RP20_CCG005697	A0A182GQL9	A0A182G9E1	Peptidase_S8 domain-containing protein.	BHLH domain-containing protein.	0.667
RP20_CCG014023	RP20_CCG015172	A0A182GQL9	A0A182GSW8	Peptidase_S8 domain-containing protein.	SSD domain-containing protein.	0.400
RP20_CCG014023	RP20_CCG020355	A0A182GQL9	A0A182H2F2	Peptidase_S8 domain-containing protein.	SSD domain-containing protein.	0.400