RP20_CCG008008 protein (Aedes albopictus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RP20_CCG008008

FCP1 homology domain-containing protein. (148 aa)

Predicted Functional Partners:

RP20_CCG007109

0.728

RP20_CCG026216

0.705

RP20_CCG027118

0.705

RP20_CCG002470

0.669

RP20_CCG011083

0.641

RP20_CCG008027

0.589

RP20_CCG021243

0.589

RP20_CCG021062

0.589

RP20_CCG018430

0.577

RP20_CCG024843

0.571

Your Current Organism:

Aedes albopictus

NCBI taxonomy Id: 7160
Other names: A. albopictus, Asian tiger mosquito, Stegomyia albopicta, forest day mosquito

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RP20_CCG002470	RP20_CCG008008	A0A023EM53	A0A182GDE9	Putative rna polymerase ii subunit polr2c/rpb3.	FCP1 homology domain-containing protein.	0.669
RP20_CCG002470	RP20_CCG008027	A0A023EM53	A0A023EDA8	Putative rna polymerase ii subunit polr2c/rpb3.	Putative rna polymerase subunit l.	0.998
RP20_CCG002470	RP20_CCG011083	A0A023EM53	A0A023EPB4	Putative rna polymerase ii subunit polr2c/rpb3.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.995
RP20_CCG002470	RP20_CCG026216	A0A023EM53	A0A182HBY7	Putative rna polymerase ii subunit polr2c/rpb3.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.940
RP20_CCG002470	RP20_CCG027118	A0A023EM53	A0A182HDC3	Putative rna polymerase ii subunit polr2c/rpb3.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.940
RP20_CCG007109	RP20_CCG008008	A0A182GBR7	A0A182GDE9	LNS2 domain-containing protein.	FCP1 homology domain-containing protein.	0.728
RP20_CCG007109	RP20_CCG018430	A0A182GBR7	A0A023EDS2	LNS2 domain-containing protein.	Uncharacterized protein.	0.735
RP20_CCG008008	RP20_CCG002470	A0A182GDE9	A0A023EM53	FCP1 homology domain-containing protein.	Putative rna polymerase ii subunit polr2c/rpb3.	0.669
RP20_CCG008008	RP20_CCG007109	A0A182GDE9	A0A182GBR7	FCP1 homology domain-containing protein.	LNS2 domain-containing protein.	0.728
RP20_CCG008008	RP20_CCG008027	A0A182GDE9	A0A023EDA8	FCP1 homology domain-containing protein.	Putative rna polymerase subunit l.	0.589
RP20_CCG008008	RP20_CCG011083	A0A182GDE9	A0A023EPB4	FCP1 homology domain-containing protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.641
RP20_CCG008008	RP20_CCG018430	A0A182GDE9	A0A023EDS2	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.577
RP20_CCG008008	RP20_CCG021062	A0A182GDE9	A0A182H3R2	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.589
RP20_CCG008008	RP20_CCG021243	A0A182GDE9	A0A023EJ76	FCP1 homology domain-containing protein.	Putative mitochondrial import inner membrane translocase subunit tim23.	0.589
RP20_CCG008008	RP20_CCG024843	A0A182GDE9	A0A182H9Q3	FCP1 homology domain-containing protein.	Uncharacterized protein.	0.571
RP20_CCG008008	RP20_CCG026216	A0A182GDE9	A0A182HBY7	FCP1 homology domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.705
RP20_CCG008008	RP20_CCG027118	A0A182GDE9	A0A182HDC3	FCP1 homology domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.705
RP20_CCG008027	RP20_CCG002470	A0A023EDA8	A0A023EM53	Putative rna polymerase subunit l.	Putative rna polymerase ii subunit polr2c/rpb3.	0.998
RP20_CCG008027	RP20_CCG008008	A0A023EDA8	A0A182GDE9	Putative rna polymerase subunit l.	FCP1 homology domain-containing protein.	0.589
RP20_CCG008027	RP20_CCG011083	A0A023EDA8	A0A023EPB4	Putative rna polymerase subunit l.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.991