RP20_CCG008489 protein (Aedes albopictus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RP20_CCG008489

Uncharacterized protein. (237 aa)

Predicted Functional Partners:

RP20_CCG008488

0.927

RP20_CCG013153

0.927

RP20_CCG007783

0.882

RP20_CCG022630

0.878

RP20_CCG013292

0.860

RP20_CCG021215

0.860

RP20_CCG025434

0.857

RP20_CCG018618

0.856

RP20_CCG014955

0.851

RP20_CCG003755

0.851

Your Current Organism:

Aedes albopictus

NCBI taxonomy Id: 7160
Other names: A. albopictus, Asian tiger mosquito, Stegomyia albopicta, forest day mosquito

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RP20_CCG003755	RP20_CCG007783	A0A182G625	A0A182GD05	Uncharacterized protein.	Uncharacterized protein.	0.878
RP20_CCG003755	RP20_CCG008488	A0A182G625	A0A182GEF3	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.851
RP20_CCG003755	RP20_CCG008489	A0A182G625	A0A182GEF4	Uncharacterized protein.	Uncharacterized protein.	0.851
RP20_CCG003755	RP20_CCG013153	A0A182G625	A0A182GNW6	Uncharacterized protein.	Brix domain-containing protein.	0.979
RP20_CCG003755	RP20_CCG013292	A0A182G625	A0A182GP65	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.929
RP20_CCG003755	RP20_CCG014955	A0A182G625	A0A023EUN8	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.992
RP20_CCG003755	RP20_CCG018618	A0A182G625	A0A182GZD5	Uncharacterized protein.	Uncharacterized protein.	0.994
RP20_CCG003755	RP20_CCG021215	A0A182G625	A0A182H3X9	Uncharacterized protein.	Uncharacterized protein.	0.996
RP20_CCG003755	RP20_CCG022630	A0A182G625	A0A182H6A9	Uncharacterized protein.	Brix domain-containing protein.	0.835
RP20_CCG003755	RP20_CCG025434	A0A182G625	A0A182HAQ5	Uncharacterized protein.	Uncharacterized protein.	0.995
RP20_CCG007783	RP20_CCG003755	A0A182GD05	A0A182G625	Uncharacterized protein.	Uncharacterized protein.	0.878
RP20_CCG007783	RP20_CCG008488	A0A182GD05	A0A182GEF3	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.857
RP20_CCG007783	RP20_CCG008489	A0A182GD05	A0A182GEF4	Uncharacterized protein.	Uncharacterized protein.	0.882
RP20_CCG007783	RP20_CCG013153	A0A182GD05	A0A182GNW6	Uncharacterized protein.	Brix domain-containing protein.	0.859
RP20_CCG007783	RP20_CCG013292	A0A182GD05	A0A182GP65	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.945
RP20_CCG007783	RP20_CCG014955	A0A182GD05	A0A023EUN8	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.918
RP20_CCG007783	RP20_CCG018618	A0A182GD05	A0A182GZD5	Uncharacterized protein.	Uncharacterized protein.	0.960
RP20_CCG007783	RP20_CCG021215	A0A182GD05	A0A182H3X9	Uncharacterized protein.	Uncharacterized protein.	0.930
RP20_CCG007783	RP20_CCG022630	A0A182GD05	A0A182H6A9	Uncharacterized protein.	Brix domain-containing protein.	0.834
RP20_CCG007783	RP20_CCG025434	A0A182GD05	A0A182HAQ5	Uncharacterized protein.	Uncharacterized protein.	0.955