Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LSM4 | RP20_CCG000393 | A0A182GZI8 | A0A182G124 | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | Uncharacterized protein. | 0.973 |
LSM4 | RP20_CCG000616 | A0A182GZI8 | A0A182G1E6 | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | PSP domain-containing protein. | 0.871 |
LSM4 | RP20_CCG005124 | A0A182GZI8 | A0A182G8E7 | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.999 |
LSM4 | RP20_CCG012166 | A0A182GZI8 | A0A182GLV9 | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.889 |
LSM4 | RP20_CCG013802 | A0A182GZI8 | A0A182GQ73 | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | MPN domain-containing protein. | 0.967 |
LSM4 | RP20_CCG016914 | A0A182GZI8 | A0A182GW90 | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | XRN2-binding (XTBD) domain-containing protein. | 0.980 |
LSM4 | RP20_CCG020515 | A0A182GZI8 | A0A182H2Q9 | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | Uncharacterized protein. | 0.979 |
LSM4 | RP20_CCG025571 | A0A182GZI8 | A0A023ECH8 | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.999 |
LSM4 | RP20_CCG026516 | A0A182GZI8 | A0A182HCE2 | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | WD_REPEATS_REGION domain-containing protein. | 0.972 |
LSM4 | RP20_CCG028579 | A0A182GZI8 | A0A182HFH1 | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | Tr-type G domain-containing protein. | 0.956 |
RP20_CCG000393 | LSM4 | A0A182G124 | A0A182GZI8 | Uncharacterized protein. | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.973 |
RP20_CCG000393 | RP20_CCG000616 | A0A182G124 | A0A182G1E6 | Uncharacterized protein. | PSP domain-containing protein. | 0.987 |
RP20_CCG000393 | RP20_CCG005124 | A0A182G124 | A0A182G8E7 | Uncharacterized protein. | U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.982 |
RP20_CCG000393 | RP20_CCG012166 | A0A182G124 | A0A182GLV9 | Uncharacterized protein. | Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.735 |
RP20_CCG000393 | RP20_CCG013802 | A0A182G124 | A0A182GQ73 | Uncharacterized protein. | MPN domain-containing protein. | 0.998 |
RP20_CCG000393 | RP20_CCG016914 | A0A182G124 | A0A182GW90 | Uncharacterized protein. | XRN2-binding (XTBD) domain-containing protein. | 0.992 |
RP20_CCG000393 | RP20_CCG020515 | A0A182G124 | A0A182H2Q9 | Uncharacterized protein. | Uncharacterized protein. | 0.994 |
RP20_CCG000393 | RP20_CCG025571 | A0A182G124 | A0A023ECH8 | Uncharacterized protein. | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.974 |
RP20_CCG000393 | RP20_CCG026516 | A0A182G124 | A0A182HCE2 | Uncharacterized protein. | WD_REPEATS_REGION domain-containing protein. | 0.992 |
RP20_CCG000393 | RP20_CCG028579 | A0A182G124 | A0A182HFH1 | Uncharacterized protein. | Tr-type G domain-containing protein. | 0.998 |
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