STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECL_00420Type IV pilus biogenesis protein PilR. (371 aa)    
Predicted Functional Partners:
ECL_00419
Type IV secretion system protein.
 
 
 0.987
ECL_00424
Shufflon protein.
 
  
 0.962
ECL_00422
PilT protein.
 
     0.948
ECL_00416
Type IV pilus formation outer membrane protein.
 
  
 0.913
hofB
Protein transport protein HofB.
  
 
 0.897
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.897
ECL_00423
Hypothetical protein.
  
  
 0.884
ECL_00414
Pilus biogenesis protein PilL.
 
   
 0.874
ECL_04757
Pilus assembly protein HofN.
   
 
 0.833
ECL_04758
Pilus assembly protein HofM.
   
 
 0.833
Your Current Organism:
Enterobacter cloacae
NCBI taxonomy Id: 716541
Other names: E. cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae str. ATCC 13047, Enterobacter cloacae subsp. cloacae strain ATCC 13047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.