Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECL_00940Fimbrial usher protein. (859 aa)    
Predicted Functional Partners:
ECL_00941
Putative chaperone protein EcpD.
 
  0.958
ECL_00092
P pilus assembly protein, chaperone PapD.
 
  0.923
ECL_02381
Chaperone protein LpfB.
 
  0.917
fimC
Fimbrial chaperone protein.
 
  0.913
ECL_00065
Putative pili assembly chaperone.
 
  0.903
mrfD
Pili chaperone protein.
 
  0.903
ECL_04370
Putative fimbrial chaperone precursor.
 
  0.903
ECL_00372
Chaperone protein PmfD.
 
  0.898
ECL_02931
Hypothetical protein.
  
  0.896
ECL_04374
Fimbrial assembly protein.
  
  0.896
Your Current Organism:
Enterobacter cloacae
NCBI taxonomy Id: 716541
Other names: E. cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae str. ATCC 13047, Enterobacter cloacae subsp. cloacae strain ATCC 13047
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