Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECL_01080Major capsid protein. (221 aa)    
Predicted Functional Partners:
ECL_02854
Phage portal protein.
 
  
 0.974
ECL_04427
Putative phage portal protein.
 
  
 0.968
ECL_04421
Putative phage tail protein.
 
    0.960
ECL_02852
Phage capsid scaffolding protein.
 
  
 0.959
ECL_02853
Hypothetical protein.
 
  
 0.958
ECL_04405
Putative phage tail protein E.
 
    0.958
ECL_04412
Phage baseplate assembly protein.
 
    0.958
ECL_02850
Phage terminase subunit.
 
    0.957
ECL_04411
Baseplate assembly protein J (GpJ).
 
    0.956
ECL_04423
Small terminase subunit.
 
    0.955
Your Current Organism:
Enterobacter cloacae
NCBI taxonomy Id: 716541
Other names: E. cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae str. ATCC 13047, Enterobacter cloacae subsp. cloacae strain ATCC 13047
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