Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
impKType VI secretion system protein ImpK. (412 aa)    
Predicted Functional Partners:
impM
Type VI secretion system protein ImpM.
 
  
 0.996
impC
Type VI secretion system protein ImpC.
 
  
 0.990
impE
Type VI secretion system protein ImpE.
 
  
 0.988
vasD
Type VI secretion system protein VasD.
 
  
 0.986
impF
Type VI secretion system protein ImpF.
 
  
 0.986
impB
Type VI secretion system protein ImpB.
 
  
 0.985
vasE
Type VI secretion system protein ImpJ.
 
  
 0.984
impL
Type VI secretion system protein ImpL.
 
 
 0.983
impG
Type VI secretion system protein ImpG.
 
  
 0.982
ECL_01802
Type VI secretion protein, EvpB/VC_A0108 family.
 
  
 0.978
Your Current Organism:
Enterobacter cloacae
NCBI taxonomy Id: 716541
Other names: E. cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae str. ATCC 13047, Enterobacter cloacae subsp. cloacae strain ATCC 13047
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