Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECL_02786Hypothetical protein. (150 aa)    
Predicted Functional Partners:
gspD
General secretion pathway protein D.
 
  
 0.667
ECL_00416
Type IV pilus formation outer membrane protein.
 
    0.620
ECL_02785
Hypothetical protein.
 
     0.566
ECL_02787
Glycoside hydrolase family 18 protein.
 
   
 0.561
ECL_00420
Type IV pilus biogenesis protein PilR.
 
     0.523
gspG
General secretion pathway protein G.
 
     0.521
ECL_03332
Putative inner membrane protein.
  
     0.447
gspF
General secretion pathway protein F.
 
     0.443
gspO
General secretion pathway protein O; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
     0.433
ECL_02240
mipA family protein.
  
     0.423
Your Current Organism:
Enterobacter cloacae
NCBI taxonomy Id: 716541
Other names: E. cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae str. ATCC 13047, Enterobacter cloacae subsp. cloacae strain ATCC 13047
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