Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECL_03479IS1 transposase orfB. (125 aa)    
Predicted Functional Partners:
ECL_03478
IS1 transposase orfA.
 
  
 0.928
ECL_00365
Hypothetical protein.
  
     0.574
ECL_03477
Hypothetical protein.
       0.555
ECL_02521
Acyltransferase 3.
  
     0.503
ECL_03714
Hypothetical protein.
  
     0.454
ECL_03480
Putative IS3 family transposase orfA.
       0.444
ECL_01287
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
  
     0.431
ECL_03481
Putative IS3 family transposase orfB.
       0.407
ECL_03712
Hypothetical protein.
  
     0.406
Your Current Organism:
Enterobacter cloacae
NCBI taxonomy Id: 716541
Other names: E. cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae str. ATCC 13047, Enterobacter cloacae subsp. cloacae strain ATCC 13047
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