Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECL_04434Bacteriophage replication protein A. (802 aa)    
Predicted Functional Partners:
ECL_04436
Hypothetical protein.
 
    0.990
ECL_04403
Putative phage tail tape measure protein.
  
    0.971
ECL_04423
Small terminase subunit.
  
    0.970
ECL_04413
Phage baseplate assembly-like protein.
  
    0.969
ECL_04415
Hypothetical protein.
  
    0.969
ECL_04414
Phage tail-like protein.
  
    0.968
ECL_04405
Putative phage tail protein E.
  
    0.967
ECL_04401
Phage late control D family protein.
  
    0.959
ECL_04402
Phage P2 GpU family protein.
  
    0.958
ECL_04410
Putative phage tail protein.
  
    0.958
Your Current Organism:
Enterobacter cloacae
NCBI taxonomy Id: 716541
Other names: E. cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae str. ATCC 13047, Enterobacter cloacae subsp. cloacae strain ATCC 13047
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