Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECL_04446Hypothetical protein. (142 aa)    
Predicted Functional Partners:
ECL_04498
Hypothetical protein.
 
  
 0.910
ECL_04347
Hypothetical protein.
  
    0.799
ECL_04445
Outer membrane usher protein.
 
     0.759
ECL_04499
Putative inner membrane protein.
 
  
 0.756
ECL_00787
Putative periplasmic protein.
   
    0.753
ECL_02479
Putative serine protein kinase.
   
    0.753
ECL_02631
TrpR binding protein WrbA.
   
    0.744
ECL_02425
Putative cytoplasmic protein.
   
    0.731
ECL_04447
Two-component system, NarL family, sensor histidine kinase EvgS.
 
    0.698
ECL_03616
ElaB protein.
  
    0.678
Your Current Organism:
Enterobacter cloacae
NCBI taxonomy Id: 716541
Other names: E. cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae str. ATCC 13047, Enterobacter cloacae subsp. cloacae strain ATCC 13047
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