Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECL_04563Sensor protein BasS/PmrB. (347 aa)    
Predicted Functional Partners:
ECL_04562
DNA-binding transcriptional regulator BasR.
 
 0.999
ECL_00717
PAS sensor protein.
   
 0.964
ECL_04118
Hybrid sensory histidine kinase BarA.
  
 0.954
ECL_03539
Two-component system, OmpR family, response regulator TctD.
 
 0.952
ECL_00346
Integral membrane sensor hybrid histidine kinase.
   
 0.951
ECL_04591
Aerobic respiration control sensor protein ArcB.
 
 0.948
ECL_04343
Two-component system, OmpR family, response regulator QseB.
 
 0.922
ECL_02128
Transcriptional regulatory protein qseB.
 
 0.906
ECL_02504
DNA-binding transcriptional regulator PhoP.
 
 0.895
ECL_05064
Two-component system, OmpR family, response regulator CpxR.
 
 0.869
Your Current Organism:
Enterobacter cloacae
NCBI taxonomy Id: 716541
Other names: E. cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae ATCC 13047, Enterobacter cloacae subsp. cloacae str. ATCC 13047, Enterobacter cloacae subsp. cloacae strain ATCC 13047
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