STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmlCdTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (175 aa)    
Predicted Functional Partners:
rfbF
Glucose-1-phosphate cytidylyltransferase; UDP-glucose pyrophosphorylase.
 
  
 0.967
ugd
Predicted UDP-glucose 6-dehydrogenase.
  
  
 0.904
rfbG
CDP-glucose 4,6-dehydratase; Nucleoside-diphosphate-sugar epimerases.
 
  
 0.900
wzx
O-antigen translocase; Membrane protein involved in the export of O- antigen and teichoic acid.
  
  
 0.889
rfbN
Glycosyl transferase, group 2 family protein; Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.856
wcw_0067
Putative NAD-dependent epimerase/dehydratase family protein.
  
  
 0.834
manC
Mannose-1-phosphate guanylyltransferase/mannose- 6-phosphate isomerase; Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.713
ompA4
Putative membrane protein.
       0.545
wcw_0071
Amino acid permeases.
       0.532
wcw_0072
Putative methyltransferase, FkbM family; SAM-dependent methyltransferases.
       0.532
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.