STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcw_0071Amino acid permeases. (408 aa)    
Predicted Functional Partners:
wcw_0072
Putative methyltransferase, FkbM family; SAM-dependent methyltransferases.
       0.773
wcw_0067
Putative NAD-dependent epimerase/dehydratase family protein.
  
    0.537
rfbG
CDP-glucose 4,6-dehydratase; Nucleoside-diphosphate-sugar epimerases.
  
    0.537
rfbN
Glycosyl transferase, group 2 family protein; Glycosyltransferases involved in cell wall biogenesis.
       0.532
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
       0.532
rfbF
Glucose-1-phosphate cytidylyltransferase; UDP-glucose pyrophosphorylase.
       0.532
glpT
Putative phosphoglycerate transporter, major facilitator superfamily; Sugar phosphate permease.
  
     0.431
wcw_1263
Amino acid transporters.
  
 
 0.408
ntt4
Putative ADP/ATP translocase; ATP/ADP translocase.
  
     0.402
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.