STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcw_0076Putative long-chain fatty-acid-CoA ligase; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (592 aa)    
Predicted Functional Partners:
fadD
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
0.909
wcw_1276
Putative long-chain fatty-acid-CoA ligase; Long-chain acyl-CoA synthetases (AMP-forming).
  
  
 
0.905
wcw_0324
Putative membrane protein; Hydrolases of the alpha/beta superfamily.
  
 
 0.848
wcw_0446
Putative Acyl-CoA dehydrogenase family protein; Acyl-CoA dehydrogenases.
 0.694
pntB
NAD(P) transhydrogenase, beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
       0.650
pntA1
NAD/NADP transhydrogenase alpha subunit.
       0.639
pntA3
NAD/NADP transhydrogenase alpha subunit.
       0.639
plsC
1-acyl-sn-glycerol-3-phosphate acyltransferase.
    
 0.615
aspC1
Aspartate/tyrosine/aromatic aminotransferase.
     
 0.602
mreC
Putative Rod shape-determining protein mreC; Cell shape-determining protein.
       0.580
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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