STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sctRType III secretion inner membrane protein SctR; Flagellar biosynthesis pathway, component FliP. (296 aa)    
Predicted Functional Partners:
sctT
Putative type III secretion inner membrane protein SctT; Flagellar biosynthesis pathway, component FliR.
 
 
 0.999
sctJ
Type III secretory pathway, lipoprotein EscJ.
 
 
 0.992
sctS
Type III secretion inner membrane protein SctS; Flagellar biosynthesis/type III secretory pathway protein.
 
   
 0.970
sctV
Type III secretion inner membrane protein SctV; Flagellar biosynthesis pathway, component FlhA.
 
 
 0.961
sctL
Flagellar biosynthesis/type III secretory pathway protein.
 
  
 0.929
sctQ3
Putative type III secretion translocase SctQ; Flagellar motor switch/type III secretory pathway protein.
 
  
 0.895
sctN
Flagellar biosynthesis/type III secretory pathway ATPase.
 
  
 0.870
sctU
Type III secretion inner membrane protein SctU; Flagellar biosynthesis pathway, component FlhB.
 
 
 0.868
wcw_0095
Conserved hypothetical protein.
       0.802
wcw_0090
Putative Chloramphenicol 3-O phosphotransferase; Guanylate kinase.
       0.762
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.