STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcw_0112Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family. (373 aa)    
Predicted Functional Partners:
wcw_0437
Putative glycosidase/glycosyltransferase; 1,4-alpha-glucan branching enzyme.
   
  
 0.960
wcw_0111
Putative membrane protein.
       0.757
adhC
Zn-dependent alcohol dehydrogenases.
  
 
 0.720
gabD
NAD-dependent aldehyde dehydrogenases.
 
 
 0.711
wcw_0113
Hypothetical protein.
       0.578
wcw_0110
Hypothetical protein.
       0.536
putA
Putative proline dehydrogenase/delta-1-pyrroline- 5-carboxylate dehydrogenase; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
  
 
 0.498
mmsA
NAD-dependent aldehyde dehydrogenases.
 
 
 0.461
fadB
Fatty acid oxidation complex, alpha subunit FadB; 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.457
wcw_0114
Putative tyrosine-protein phosphatase; Chromosome segregation ATPases.
       0.433
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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