STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcw_0143Permeases of the major facilitator superfamily. (397 aa)    
Predicted Functional Partners:
wcw_0141
Lipid A disaccharide synthase.
 
     0.794
wcw_0994
Putative membrane protein.
  
     0.720
wcw_0142
Conserved hypothetical protein.
       0.705
omcB
Putative 60 kDa cysteine-rich outer membrane protein.
  
     0.705
nrdD
Ribonucleoside triphosphate reductase; Ribonucleotide reductase, alpha subunit.
  
     0.664
wcw_0280
Conserved hypothetical protein.
  
     0.649
wcw_1974
Conserved hypothetical protein.
  
     0.635
exbD
Biopolymer transport protein.
  
 
   0.610
wcw_1966
Putative membrane protein.
  
     0.609
wcw_0140
Beta-phosphoglucomutase hydrolase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
     
 0.545
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.