STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcw_0147Hypothetical protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (233 aa)    
Predicted Functional Partners:
wcw_0148
DNA repair photolyase.
 
     0.947
wcw_0149
Conserved hypothetical protein.
 
     0.945
wcw_0150
Hypothetical protein.
       0.723
putA
Putative proline dehydrogenase/delta-1-pyrroline- 5-carboxylate dehydrogenase; NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
   
    0.561
wcw_0361
Putative ABC transporter ATP-binding protein; ABC-type multidrug transport system, ATPase and permease components.
  
     0.534
wcw_0151
Leucyl aminopeptidase (aminopeptidase T).
       0.514
prmA
Ribosomal protein L11 methylase.
       0.514
wcw_0362
Putative ABC transporter ATP-binding protein; ABC-type multidrug transport system, ATPase and permease components.
  
     0.500
msbA
Putative Lipid A export ATP-binding/permease protein; ABC-type multidrug transport system, ATPase and permease components.
  
     0.423
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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