STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kamALysine 2,3-aminomutase. (327 aa)    
Predicted Functional Partners:
genX
Putative lysyl-tRNA synthetase-like protein; lysyl-tRNA synthetase (class II).
 
  
 0.810
wcw_0324
Putative membrane protein; Hydrolases of the alpha/beta superfamily.
       0.773
wcw_0325
Putative membrane protein; Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
       0.651
wcw_0326
Putative membrane protein; Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
       0.651
wcw_0327
Hypothetical protein.
       0.651
wcw_0328
Hypothetical protein.
       0.651
wcw_0329
Putative membrane protein.
       0.638
murA
UDP-N-acetylglucosamine 1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.559
efp1
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
   
 0.428
ppa
Inorganic pyrophosphatase.
       0.416
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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