Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| csrA | dnaQ1 | wcw_0617 | wcw_0615 | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.566 |
| csrA | sctN | wcw_0617 | wcw_1616 | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Flagellar biosynthesis/type III secretory pathway ATPase. | 0.403 |
| csrA | wcw_0552 | wcw_0617 | wcw_0552 | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Hypothetical protein. | 0.556 |
| csrA | wcw_0616 | wcw_0617 | wcw_0616 | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Conserved hypothetical protein. | 0.566 |
| csrA | wcw_0618 | wcw_0617 | wcw_0618 | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Hypothetical protein. | 0.516 |
| csrA | wcw_0619 | wcw_0617 | wcw_0619 | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Putative membrane protein. | 0.478 |
| dnaQ1 | csrA | wcw_0615 | wcw_0617 | DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.566 |
| dnaQ1 | wcw_0616 | wcw_0615 | wcw_0616 | DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | Conserved hypothetical protein. | 0.802 |
| dnaQ1 | wcw_0619 | wcw_0615 | wcw_0619 | DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | Putative membrane protein. | 0.415 |
| sctN | csrA | wcw_1616 | wcw_0617 | Flagellar biosynthesis/type III secretory pathway ATPase. | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.403 |
| sctN | wcw_0619 | wcw_1616 | wcw_0619 | Flagellar biosynthesis/type III secretory pathway ATPase. | Putative membrane protein. | 0.818 |
| wcw_0552 | csrA | wcw_0552 | wcw_0617 | Hypothetical protein. | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.556 |
| wcw_0616 | csrA | wcw_0616 | wcw_0617 | Conserved hypothetical protein. | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.566 |
| wcw_0616 | dnaQ1 | wcw_0616 | wcw_0615 | Conserved hypothetical protein. | DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.802 |
| wcw_0616 | wcw_0619 | wcw_0616 | wcw_0619 | Conserved hypothetical protein. | Putative membrane protein. | 0.415 |
| wcw_0618 | csrA | wcw_0618 | wcw_0617 | Hypothetical protein. | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.516 |
| wcw_0618 | wcw_0619 | wcw_0618 | wcw_0619 | Hypothetical protein. | Putative membrane protein. | 0.620 |
| wcw_0619 | csrA | wcw_0619 | wcw_0617 | Putative membrane protein. | Putative carbon storage regulatory protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.478 |
| wcw_0619 | dnaQ1 | wcw_0619 | wcw_0615 | Putative membrane protein. | DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.415 |
| wcw_0619 | sctN | wcw_0619 | wcw_1616 | Putative membrane protein. | Flagellar biosynthesis/type III secretory pathway ATPase. | 0.818 |
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