STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcw_0854Leucine-rich repeat (LRR) protein. (494 aa)    
Predicted Functional Partners:
wcw_0114
Putative tyrosine-protein phosphatase; Chromosome segregation ATPases.
  
 
 0.900
wcw_1837
Putative tyrosine-protein phosphatase; Protein tyrosine phosphatase.
  
 
 0.896
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
    
 
 0.865
wcw_0044
Conserved hypothetical protein.
  
     0.758
dbp2
Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
    
 0.738
wcw_1409
Putative ATP-dependent RNA helicase DBP2; Superfamily II DNA and RNA helicases.
    
 0.738
wcw_0853
Putative membrane protein.
       0.723
wcw_1576
Hypothetical protein; FOG: Ankyrin repeat.
  
 0.716
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.713
wcw_0194
Hypothetical protein; FOG: Ankyrin repeat.
  
 0.676
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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