STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcw_0954Metalloprotease; Predicted Zn-dependent peptidases. (437 aa)    
Predicted Functional Partners:
wcw_1968
Conserved hypothetical protein.
  
 0.991
wcw_1967
Cytochrome b/b6 domain-containing protein; Cytochrome b subunit of the bc complex.
  
 
 0.966
aas1
Acylglycerophosphoethanolamine acyltransferase / acyl-ACP synthetase; Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.917
aas3
Acylglycerophosphoethanolamine acyltransferase/acyl-ACP synthetase; Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.917
cyoB
Heme/copper-type cytochrome/quinol oxidases, subunit 1; Belongs to the heme-copper respiratory oxidase family.
   
 
 0.875
cyoA
Heme/copper-type cytochrome/quinol oxidases, subunit 2.
   
 
 0.875
cyoC
Heme/copper-type cytochrome/quinol oxidase, subunit 3.
   
 
 0.870
wcw_1970
Pyridine nucleotide-disulfide oxidoreductase; NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
 
 0.869
wcw_1368
Hypothetical protein.
 
 
 0.858
atpH
Putative F-type ATP synthase, subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.
   
 
 0.740
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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