STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sycD5Putative type III secretion chaperone SycD/LcrH; FOG: TPR repeat. (156 aa)    
Predicted Functional Partners:
wcw_0848
Putative type III secreted protein SctW.
    
 
 0.897
sctJ
Type III secretory pathway, lipoprotein EscJ.
 
  
 0.814
wcw_0964
Hypothetical protein.
       0.802
wcw_0962
Putative membrane protein.
       0.773
wcw_0961
Putative membrane protein.
       0.757
ruvB
Holliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
  
    0.500
wcw_0965
Putative sodium-dependent transporter; Na+-dependent transporters of the SNF family.
       0.495
sctD
Putative type III secretion system protein SctD; FOG: FHA domain.
 
    0.480
sctV
Type III secretion inner membrane protein SctV; Flagellar biosynthesis pathway, component FlhA.
 
    0.418
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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