STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
flaA1FlaA1, SDR superfamily member with inverting 4,6- dehydratase activity; Predicted nucleoside-diphosphate sugar epimerases. (337 aa)    
Predicted Functional Partners:
arnB
UDP-4-amino-4-deoxy-L-arabinose-- oxoglutarateaminotransferase; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.989
wblA
UDP-glucose 6-dehydrogenase; UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
 0.925
murA
UDP-N-acetylglucosamine 1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
    
 0.910
glmU3
UDP-glucose pyrophosphorylase.
     
  0.900
wcaJ
Sugar transferases involved in lipopolysaccharide synthesis.
 
  
 0.895
manC
Mannose-1-phosphate guanylyltransferase/mannose- 6-phosphate isomerase; Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.839
lpxA
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine o-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
    
  0.815
spsF
3-deoxy-manno-octulosonate cytidylyltransferase; Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog.
 
   
 0.765
wbpE
Putative UDP-4-amino-4-deoxy-L-arabinose-- oxoglutarate aminotransferase; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.722
wza
Periplasmic protein involved in polysaccharide export.
  
  
 0.674
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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