STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcw_1617Conserved hypothetical protein. (165 aa)    
Predicted Functional Partners:
sctV
Type III secretion inner membrane protein SctV; Flagellar biosynthesis pathway, component FlhA.
    
   0.892
sctN
Flagellar biosynthesis/type III secretory pathway ATPase.
   
 
 0.837
pkn5
Serine/threonine protein kinase.
     
 0.735
wcw_1618
Hypothetical protein.
       0.726
sctQ1
Putative type III secretion translocase SctQ; Flagellar motor switch/type III secretory pathway protein.
       0.718
sctQ3
Putative type III secretion translocase SctQ; Flagellar motor switch/type III secretory pathway protein.
       0.718
sctG
Putative needle chaperone SctG.
     
 0.636
wcw_1615
Conserved hypothetical protein.
       0.587
sctC
Putative type III secretion protein SctC; Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.
       0.498
sctE
Putative needle chaperone SctE.
     
 0.456
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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