STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcw_1726Di- and tricarboxylate transporters. (642 aa)    
Predicted Functional Partners:
wcw_1725
Ca2+/Na+ antiporter.
 
  
 0.841
wcw_1724
Conserved hypothetical protein.
       0.709
wcw_1727
Conserved hypothetical protein.
  
  
 0.650
hemCD
Porphobilinogen deaminase/Uroporphyrinogen-III synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
  
 0.647
trkH1
Putative potassium uptake system, Trk family; Trk-type K+ transport systems, membrane components.
  
 
 0.647
trkH2
Potassium uptake system, Trk family; Trk-type K+ transport systems, membrane components.
  
 
 0.647
rsmB1
Putative ribosomal RNA small subunit methyltransferase B; tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.602
mrpA
Multiple resistance and pH homeostasis system, subunit A/B; NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.
     
 0.559
wcw_1654
IMP dehydrogenase/GMP reductase; Belongs to the IMPDH/GMPR family.
  
  
 0.556
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; GMP synthase, PP-ATPase domain/subunit.
  
    0.546
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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