STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcw_1947Conserved hypothetical protein; Predicted HD superfamily hydrolase. (382 aa)    
Predicted Functional Partners:
wcw_1136
Putative sensory histidine kinase; Predicted periplasmic ligand-binding sensor domain.
    
 
 0.637
wcw_1944
Pseudouridylate synthases, 23S RNA-specific.
  
    0.504
wcw_1945
Putative membrane protein.
       0.499
wcw_1946
Conserved hypothetical protein.
       0.499
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.436
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.