STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcw_1976Uncharacterized protein conserved in bacteria. (426 aa)    
Predicted Functional Partners:
wcw_1974
Conserved hypothetical protein.
 
     0.840
wcw_1977
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.804
wcw_1975
Putative membrane protein.
       0.802
wcw_1035
Conserved hypothetical protein.
  
     0.774
wcw_0569
Conserved hypothetical protein; Predicted Rossmann fold nucleotide-binding protein.
  
     0.773
wcw_1167
Conserved hypothetical protein.
  
     0.773
wcw_0801
Uncharacterized protein conserved in bacteria.
  
     0.770
sctD
Putative type III secretion system protein SctD; FOG: FHA domain.
  
     0.769
wcw_0843
Conserved hypothetical protein; FOG: WD40 repeat.
  
     0.761
yaeL
Metalloprotease; Predicted membrane-associated Zn-dependent proteases 1.
  
     0.759
Your Current Organism:
Waddlia chondrophila
NCBI taxonomy Id: 716544
Other names: W. chondrophila WSU 86-1044, Waddlia chondrophila WSU 86-1044
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