STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA06663.1Protein of unknown function, DUF481. (353 aa)    
Predicted Functional Partners:
SEA90683.1
Rhamnosyltransferase subunit A.
  
     0.744
SEA98210.1
Hypothetical protein.
  
     0.567
SEA09649.1
AraC-type DNA-binding protein.
  
     0.510
SEA98194.1
Type I secretion C-terminal target domain (VC_A0849 subclass).
  
     0.507
SEA70804.1
Pilin (type 1 fimbria component protein).
  
     0.456
SEA06610.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
       0.433
SDZ86924.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Lonsdalea quercina
NCBI taxonomy Id: 71657
Other names: ATCC 29281, Brenneria quercina, CCUG 48867, CFBP 3617, CIP 105201, DSM 4561, Erwinia quercina, L. quercina, LMG 2724, LMG:2724
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.