STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA62228.1GntR family transcriptional regulator. (252 aa)    
Predicted Functional Partners:
SEA91366.1
HTH-type transcriptional regulator, transcriptional repressor of NAD biosynthesis genes.
   
  
 0.768
SEA02882.1
DNA-binding transcriptional regulator, GntR family.
  
     0.766
SEA69634.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.750
SEA62284.1
Fructoselysine-6-P-deglycase FrlB with duplicated sugar isomerase (SIS) domain.
 
  
 0.703
SEA62310.1
Sugar or nucleoside kinase, ribokinase family.
 
  
 0.667
SEA53985.1
DNA-binding transcriptional regulator, FadR family.
  
    0.568
SEA10546.1
PTS system, beta-glucosides-specific IIC component.
 
  
 0.552
SDZ79985.1
PTS system, N-acetylglucosamine-specific IIC component.
  
  
 0.488
SEA62252.1
Lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
       0.465
SEA62200.1
Stress responsive A/B Barrel Domain.
       0.463
Your Current Organism:
Lonsdalea quercina
NCBI taxonomy Id: 71657
Other names: ATCC 29281, Brenneria quercina, CCUG 48867, CFBP 3617, CIP 105201, DSM 4561, Erwinia quercina, L. quercina, LMG 2724, LMG:2724
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