A0A182F5K4 protein (Anopheles albimanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A182F5K4

Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis. (610 aa)

Predicted Functional Partners:

A0A182F941

0.637

A0A182FH43

0.607

A0A182FQS3

0.580

A0A182FIC2

0.569

A0A182F5B1

0.550

A0A182F733

0.548

A0A182FGN2

0.518

A0A182FUJ8

0.509

A0A182FYX5

0.508

A0A182F4Y3

0.501

Your Current Organism:

Anopheles albimanus

NCBI taxonomy Id: 7167
Other names: A. albimanus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A182F4Y3	A0A182F5B1	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.963
A0A182F4Y3	A0A182F5K4	Uncharacterized protein.	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	0.501
A0A182F4Y3	A0A182F941	Uncharacterized protein.	Uncharacterized protein.	0.534
A0A182F4Y3	A0A182FH43	Uncharacterized protein.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.886
A0A182F4Y3	A0A182FQS3	Uncharacterized protein.	Uncharacterized protein.	0.947
A0A182F4Y3	A0A182FUJ8	Uncharacterized protein.	Uncharacterized protein.	0.925
A0A182F5B1	A0A182F4Y3	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.963
A0A182F5B1	A0A182F5K4	Bms1-type G domain-containing protein.	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	0.550
A0A182F5B1	A0A182F941	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.988
A0A182F5B1	A0A182FH43	Bms1-type G domain-containing protein.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.999
A0A182F5B1	A0A182FQS3	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.465
A0A182F5B1	A0A182FUJ8	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.999
A0A182F5B1	A0A182FYX5	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.732
A0A182F5K4	A0A182F4Y3	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	Uncharacterized protein.	0.501
A0A182F5K4	A0A182F5B1	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	Bms1-type G domain-containing protein.	0.550
A0A182F5K4	A0A182F733	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	Uncharacterized protein.	0.548
A0A182F5K4	A0A182F941	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	Uncharacterized protein.	0.637
A0A182F5K4	A0A182FGN2	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.	0.518
A0A182F5K4	A0A182FH43	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.607
A0A182F5K4	A0A182FIC2	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	DRBM domain-containing protein.	0.569