STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARN75589.1Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)    
Predicted Functional Partners:
ARN75590.1
Paraslipin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.915
cobS
adenosylcobinamide-GDP ribazoletransferase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.792
ARN73315.1
Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.711
ARN75020.1
Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
ARN74248.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
ARN75592.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.527
ARN75591.1
Type II secretion system protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.515
ARN75597.1
Type II secretion system protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.489
ARN75600.1
Hypothetical protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
     0.477
ARN74247.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.454
Your Current Organism:
Oceanicoccus sagamiensis
NCBI taxonomy Id: 716816
Other names: KCTC 23278, NBRC 107125, O. sagamiensis, gamma proteobacterium PZ-5, strain PZ-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.