A0A4Y7SHU5 protein (Coprinellus micaceus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Y7SHU5

Uncharacterized protein. (85 aa)

Predicted Functional Partners:

A0A4Y7TGE8

0.925

A0A4Y7TR64

0.921

A0A4Y7TRE6

0.917

A0A4Y7TF42

0.867

A0A4Y7U040

0.773

A0A4Y7RP09

0.679

A0A4Y7TW08

0.679

A0A4Y7TWM0

0.679

A0A4Y7SN23

0.570

A0A4Y7SJ35

0.514

Your Current Organism:

Coprinellus micaceus

NCBI taxonomy Id: 71717
Other names: C. micaceus, Coprinus micaceus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Y7RP09	A0A4Y7SHU5	Uncharacterized protein.	Uncharacterized protein.	0.679
A0A4Y7RP09	A0A4Y7TF42	Uncharacterized protein.	ATP synthase subunit gamma.	0.996
A0A4Y7RP09	A0A4Y7TGE8	Uncharacterized protein.	ATP4, subunit B of the stator stalk of mitochondrial F1F0 ATP synthase.	0.994
A0A4Y7RP09	A0A4Y7TR64	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.990
A0A4Y7RP09	A0A4Y7TRE6	Uncharacterized protein.	ATP synthase F1, alpha subunit; Belongs to the ATPase alpha/beta chains family.	0.996
A0A4Y7RP09	A0A4Y7U040	Uncharacterized protein.	Uncharacterized protein.	0.947
A0A4Y7SHU5	A0A4Y7RP09	Uncharacterized protein.	Uncharacterized protein.	0.679
A0A4Y7SHU5	A0A4Y7SJ35	Uncharacterized protein.	Myosin regulatory light chain cdc4.	0.514
A0A4Y7SHU5	A0A4Y7SN23	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A4Y7SHU5	A0A4Y7TF42	Uncharacterized protein.	ATP synthase subunit gamma.	0.867
A0A4Y7SHU5	A0A4Y7TGE8	Uncharacterized protein.	ATP4, subunit B of the stator stalk of mitochondrial F1F0 ATP synthase.	0.925
A0A4Y7SHU5	A0A4Y7TR64	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.921
A0A4Y7SHU5	A0A4Y7TRE6	Uncharacterized protein.	ATP synthase F1, alpha subunit; Belongs to the ATPase alpha/beta chains family.	0.917
A0A4Y7SHU5	A0A4Y7TW08	Uncharacterized protein.	Uncharacterized protein.	0.679
A0A4Y7SHU5	A0A4Y7TWM0	Uncharacterized protein.	Epsilon subunit of F1F0-ATP synthase N-terminal domain-containing protein.	0.679
A0A4Y7SHU5	A0A4Y7U040	Uncharacterized protein.	Uncharacterized protein.	0.773
A0A4Y7SJ35	A0A4Y7SHU5	Myosin regulatory light chain cdc4.	Uncharacterized protein.	0.514
A0A4Y7SJ35	A0A4Y7SN23	Myosin regulatory light chain cdc4.	Uncharacterized protein.	0.573
A0A4Y7SN23	A0A4Y7SHU5	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A4Y7SN23	A0A4Y7SJ35	Uncharacterized protein.	Myosin regulatory light chain cdc4.	0.573