A0A4Y7SKX4 protein (Coprinellus micaceus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Y7SKX4

Uncharacterized protein. (683 aa)

Predicted Functional Partners:

A0A4Y7TM44

0.953

A0A4Y7STF8

0.856

A0A4Y7SEX3

0.848

A0A4Y7TXR9

0.844

A0A4Y7SXA3

0.842

A0A4Y7TYX4

0.838

A0A4Y7TLB2

0.837

A0A4Y7TYG9

0.822

A0A4Y7TUZ1

0.796

A0A4Y7TWR4

0.796

Your Current Organism:

Coprinellus micaceus

NCBI taxonomy Id: 71717
Other names: C. micaceus, Coprinus micaceus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Y7SEX3	A0A4Y7SKX4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.848
A0A4Y7SEX3	A0A4Y7SXA3	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Actin-like ATPase domain-containing protein; Belongs to the actin family.	0.997
A0A4Y7SEX3	A0A4Y7TUZ1	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	RPOLD domain-containing protein.	0.744
A0A4Y7SEX3	A0A4Y7TWR4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	RPOLD domain-containing protein.	0.617
A0A4Y7SEX3	A0A4Y7TYX4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein; Belongs to the RecA family.	0.564
A0A4Y7SKX4	A0A4Y7SEX3	Uncharacterized protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.848
A0A4Y7SKX4	A0A4Y7STF8	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.856
A0A4Y7SKX4	A0A4Y7SXA3	Uncharacterized protein.	Actin-like ATPase domain-containing protein; Belongs to the actin family.	0.842
A0A4Y7SKX4	A0A4Y7TLB2	Uncharacterized protein.	UvrD-helicase-domain-containing protein.	0.837
A0A4Y7SKX4	A0A4Y7TM44	Uncharacterized protein.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.953
A0A4Y7SKX4	A0A4Y7TUZ1	Uncharacterized protein.	RPOLD domain-containing protein.	0.796
A0A4Y7SKX4	A0A4Y7TWR4	Uncharacterized protein.	RPOLD domain-containing protein.	0.796
A0A4Y7SKX4	A0A4Y7TXR9	Uncharacterized protein.	RNA polymerase Rpb6.	0.844
A0A4Y7SKX4	A0A4Y7TYG9	Uncharacterized protein.	Uncharacterized protein.	0.822
A0A4Y7SKX4	A0A4Y7TYX4	Uncharacterized protein.	Uncharacterized protein; Belongs to the RecA family.	0.838
A0A4Y7STF8	A0A4Y7SKX4	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.856
A0A4Y7STF8	A0A4Y7TLB2	P-loop containing nucleoside triphosphate hydrolase protein.	UvrD-helicase-domain-containing protein.	0.950
A0A4Y7STF8	A0A4Y7TM44	P-loop containing nucleoside triphosphate hydrolase protein.	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily.	0.894
A0A4Y7STF8	A0A4Y7TUZ1	P-loop containing nucleoside triphosphate hydrolase protein.	RPOLD domain-containing protein.	0.452
A0A4Y7STF8	A0A4Y7TWR4	P-loop containing nucleoside triphosphate hydrolase protein.	RPOLD domain-containing protein.	0.554