STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4Y7SWY5Uncharacterized protein. (488 aa)    
Predicted Functional Partners:
A0A4Y7TY31
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.864
A0A4Y7SNB9
RBP11-like subunits of RNA polymerase.
    
 0.857
A0A4Y7TG48
Uncharacterized protein.
    
 0.857
A0A4Y7TKJ3
DNA-directed RNA polymerase RPB5 subunit.
    
 0.857
A0A4Y7TNI6
Uncharacterized protein.
    
 0.857
A0A4Y7TRY4
RNA polymerase II.
    
 0.857
A0A4Y7TWR4
RPOLD domain-containing protein.
    
 0.857
A0A4Y7TXR9
RNA polymerase Rpb6.
    
 0.857
A0A4Y7TYY3
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.857
A0A4Y7U1B6
Uncharacterized protein.
    
 0.857
Your Current Organism:
Coprinellus micaceus
NCBI taxonomy Id: 71717
Other names: C. micaceus, Coprinus micaceus
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