A0A4Y7T8L4 protein (Coprinellus micaceus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Y7T8L4

Uncharacterized protein. (414 aa)

Predicted Functional Partners:

A0A4Y7TML5

0.729

A0A4Y7SBJ8

0.637

A0A4Y7TP47

0.637

A0A4Y7T762

0.585

A0A4Y7TRJ7

0.585

A0A4Y7TQD4

0.543

A0A4Y7TE80

0.512

A0A4Y7TX20

0.512

A0A4Y7T4L6

0.486

A0A4Y7T4M6

0.486

Your Current Organism:

Coprinellus micaceus

NCBI taxonomy Id: 71717
Other names: C. micaceus, Coprinus micaceus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Y7SBJ8	A0A4Y7T4L6	Uncharacterized protein.	F-box domain-containing protein.	0.932
A0A4Y7SBJ8	A0A4Y7T4M6	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.932
A0A4Y7SBJ8	A0A4Y7T8L4	Uncharacterized protein.	Uncharacterized protein.	0.637
A0A4Y7SBJ8	A0A4Y7TE80	Uncharacterized protein.	Histone acetyltransferase type B subunit 2.	0.620
A0A4Y7SBJ8	A0A4Y7TML5	Uncharacterized protein.	WD40 repeat-like protein.	0.717
A0A4Y7SBJ8	A0A4Y7TP47	Uncharacterized protein.	Uncharacterized protein.	0.852
A0A4Y7SBJ8	A0A4Y7TQD4	Uncharacterized protein.	Chromo domain-containing protein.	0.753
A0A4Y7SBJ8	A0A4Y7TRJ7	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.574
A0A4Y7SBJ8	A0A4Y7TX20	Uncharacterized protein.	Histone acetyltransferase type B subunit 2.	0.620
A0A4Y7T4L6	A0A4Y7SBJ8	F-box domain-containing protein.	Uncharacterized protein.	0.932
A0A4Y7T4L6	A0A4Y7T762	F-box domain-containing protein.	WD40 repeat-like protein.	0.950
A0A4Y7T4L6	A0A4Y7T8L4	F-box domain-containing protein.	Uncharacterized protein.	0.486
A0A4Y7T4L6	A0A4Y7TE80	F-box domain-containing protein.	Histone acetyltransferase type B subunit 2.	0.945
A0A4Y7T4L6	A0A4Y7TML5	F-box domain-containing protein.	WD40 repeat-like protein.	0.859
A0A4Y7T4L6	A0A4Y7TP47	F-box domain-containing protein.	Uncharacterized protein.	0.932
A0A4Y7T4L6	A0A4Y7TQD4	F-box domain-containing protein.	Chromo domain-containing protein.	0.811
A0A4Y7T4L6	A0A4Y7TRJ7	F-box domain-containing protein.	B30.2/SPRY domain-containing protein.	0.947
A0A4Y7T4L6	A0A4Y7TX20	F-box domain-containing protein.	Histone acetyltransferase type B subunit 2.	0.945
A0A4Y7T4M6	A0A4Y7SBJ8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.932
A0A4Y7T4M6	A0A4Y7T762	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	WD40 repeat-like protein.	0.972