A0A4Y7TMY8 protein (Coprinellus micaceus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4Y7TMY8

60S ribosomal protein L7/L12. (178 aa)

Predicted Functional Partners:

A0A4Y7SXQ5

0.998

A0A4Y7SZZ1

0.998

A0A4Y7T860

0.998

A0A4Y7T8D5

0.998

A0A4Y7TLD9

0.998

A0A4Y7TLF2

0.998

A0A4Y7TLL4

0.998

A0A4Y7TM52

0.998

A0A4Y7TMQ9

0.998

A0A4Y7TNA6

0.998

Your Current Organism:

Coprinellus micaceus

NCBI taxonomy Id: 71717
Other names: C. micaceus, Coprinus micaceus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4Y7SXQ5	A0A4Y7SZZ1	Ribosomal protein L24.	Uncharacterized protein.	0.998
A0A4Y7SXQ5	A0A4Y7T860	Ribosomal protein L24.	Ribosomal protein S5 domain 2-like protein; Belongs to the universal ribosomal protein uS9 family.	0.998
A0A4Y7SXQ5	A0A4Y7T8D5	Ribosomal protein L24.	Mitochondrial 50S ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.999
A0A4Y7SXQ5	A0A4Y7TLD9	Ribosomal protein L24.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.998
A0A4Y7SXQ5	A0A4Y7TLF2	Ribosomal protein L24.	Uncharacterized protein.	0.998
A0A4Y7SXQ5	A0A4Y7TLL4	Ribosomal protein L24.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.998
A0A4Y7SXQ5	A0A4Y7TM52	Ribosomal protein L24.	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.998
A0A4Y7SXQ5	A0A4Y7TMQ9	Ribosomal protein L24.	Uncharacterized protein.	0.998
A0A4Y7SXQ5	A0A4Y7TMY8	Ribosomal protein L24.	60S ribosomal protein L7/L12.	0.998
A0A4Y7SXQ5	A0A4Y7TNA6	Ribosomal protein L24.	60s ribosomal protein l5-b.	0.999
A0A4Y7SZZ1	A0A4Y7SXQ5	Uncharacterized protein.	Ribosomal protein L24.	0.998
A0A4Y7SZZ1	A0A4Y7T860	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein; Belongs to the universal ribosomal protein uS9 family.	0.998
A0A4Y7SZZ1	A0A4Y7T8D5	Uncharacterized protein.	Mitochondrial 50S ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.998
A0A4Y7SZZ1	A0A4Y7TLD9	Uncharacterized protein.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.998
A0A4Y7SZZ1	A0A4Y7TLF2	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A4Y7SZZ1	A0A4Y7TLL4	Uncharacterized protein.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.998
A0A4Y7SZZ1	A0A4Y7TM52	Uncharacterized protein.	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.998
A0A4Y7SZZ1	A0A4Y7TMQ9	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A4Y7SZZ1	A0A4Y7TMY8	Uncharacterized protein.	60S ribosomal protein L7/L12.	0.998
A0A4Y7SZZ1	A0A4Y7TNA6	Uncharacterized protein.	60s ribosomal protein l5-b.	0.998