STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4Y7TQ36H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (190 aa)    
Predicted Functional Partners:
A0A4Y7TQM0
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.989
A0A4Y7TYK6
Putative rRNA pseudouridine synthase.
   
 0.984
A0A4Y7TS74
Pseudouridine synthase.
   
 0.965
A0A4Y7SVM8
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.941
A0A4Y7U059
Fibrillarin-like protein.
   
 
 0.930
A0A4Y7SXV3
Uncharacterized protein.
   
 0.905
A0A4Y7SZ65
Uncharacterized protein.
   
 0.905
A0A4Y7T510
L30e-like protein.
   
 0.905
A0A4Y7T5K2
L30e-like protein.
   
 0.905
A0A4Y7TDI3
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
 0.905
Your Current Organism:
Coprinellus micaceus
NCBI taxonomy Id: 71717
Other names: C. micaceus, Coprinus micaceus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.