STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA56260.1PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; manually curated. (738 aa)    
Predicted Functional Partners:
AGA59306.1
PAS domain S-box; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box.
  
 
 0.891
AGA57981.1
Methylase of chemotaxis methyl-accepting protein; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
 
      0.883
AGA57562.1
Response regulator containing a CheY-like receiver domain and an HD-GYP domain; PFAM: HD domain; GAF domain.
   
 0.789
AGA57589.1
PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter.
 
      0.760
AGA56920.1
PFAM: HD domain; PAS fold; TIGRFAM: PAS domain S-box.
   
 0.752
AGA58742.1
HD-GYP domain-containing protein; PFAM: HD domain.
 
   
 0.738
AGA59766.1
HD-GYP domain-containing protein; PFAM: HD domain.
 
   
 0.735
AGA57152.1
HD-GYP domain-containing protein; PFAM: HD domain.
 
   
 0.721
AGA59200.1
Putative domain HDIG-containing protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG.
 
   
 0.703
AGA57126.1
PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
0.606
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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