STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA56326.1PFAM: DinB family. (256 aa)    
Predicted Functional Partners:
AGA59257.1
PFAM: Protein of unknown function (DUF2935).
  
     0.621
AGA56565.1
Hypothetical protein.
  
     0.567
AGA56327.1
Putative transcriptional regulator; PFAM: HxlR-like helix-turn-helix.
       0.551
AGA59251.1
Putative transcriptional regulator; PFAM: Helix-turn-helix; Anti-repressor SinI.
  
     0.481
AGA58838.1
PFAM: Protein of unknown function (DUF1806).
  
    0.452
AGA56417.1
PFAM: NAD dependent epimerase/dehydratase family.
  
     0.447
AGA57435.1
PFAM: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); TIGRFAM: sporulation lipoprotein, YhcN/YlaJ family.
  
     0.416
AGA57720.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.