STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA56354.1PFAM: Bacterial regulatory proteins, gntR family; family. (382 aa)    
Predicted Functional Partners:
AGA57418.1
PFAM: Bacterial regulatory proteins, lacI family; family.
  
   
 0.777
AGA58390.1
PFAM: Bacterial regulatory proteins, lacI family; family.
  
   
 0.777
AGA58343.1
PTS system, glucose subfamily, IIA component; PFAM: Phosphotransferase system, EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; phosphotransferase system, EIIB; TIGRFAM: PTS system, glucose-like IIB component; PTS system, glucose subfamily, IIA component.
  
  
 0.761
AGA56353.1
ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
     
 0.744
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
   
 
 0.735
AGA56840.1
DNA-binding domain-containing protein, AraC-type; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
 
  
 0.732
AGA56781.1
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
 
  
 0.729
AGA59035.1
Pullulanase, type I; PFAM: Bacterial Ig-like domain (group 2); S-layer homology domain; Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Bacterial pullanase-associated domain; TIGRFAM: pullulanase, type I; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.723
AGA57545.1
DNA-binding domain-containing protein, AraC-type; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
 
  
 0.721
AGA59214.1
PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
   
 
 0.696
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.