STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA56634.1Putative hydrolase, CocE/NonD family; PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: putative hydrolase, CocE/NonD family. (568 aa)    
Predicted Functional Partners:
AGA56635.1
acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.776
AGA56633.1
Isopropylmalate/homocitrate/citramalate synthase; PFAM: HMGL-like.
       0.773
AGA56636.1
PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit.
  
    0.707
AGA56632.1
Putative acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
       0.687
AGA56637.1
PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit.
       0.509
AGA56631.1
PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
       0.453
AGA57115.1
ABC-type sugar transport system, periplasmic component; PFAM: Domain of unknown function (DUF3502); Bacterial extracellular solute-binding protein.
  
     0.434
AGA56638.1
ABC-type dipeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
       0.422
AGA59018.1
ABC-type sugar transport system, periplasmic component; PFAM: Domain of unknown function (DUF3502); Bacterial extracellular solute-binding protein.
  
     0.413
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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