STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA56643.1PFAM: Alpha-L-fucosidase. (486 aa)    
Predicted Functional Partners:
AGA59286.1
Hypothetical protein.
 
 
  0.947
AGA59278.1
Hypothetical protein.
 
 
  0.945
AGA57684.1
Hypothetical protein.
 
 
  0.943
AGA56633.1
Isopropylmalate/homocitrate/citramalate synthase; PFAM: HMGL-like.
 
      0.627
AGA59269.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
 
     0.588
AGA59287.1
Hypothetical protein; PFAM: Putative glycosyl hydrolase of unknown function (DUF1680).
  
     0.561
AGA56715.1
PFAM: Domain of unknown function (DUF303).
 
     0.554
AGA57434.1
Hypothetical protein.
 
     0.553
AGA56364.1
Alpha-mannosidase; PFAM: Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases family 38 N-terminal domain; Alpha mannosidase, middle domain; Raffinose synthase or seed inhibition protein Sip1.
 
   
 0.542
AGA56654.1
Hypothetical protein; PFAM: Putative glycosyl hydrolase of unknown function (DUF1680).
  
     0.532
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.