STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA56876.1PFAM: Protein of unknown function (DUF3048). (361 aa)    
Predicted Functional Partners:
AGA56877.1
Phosphate transport regulator related to PhoU; PFAM: Protein of unknown function DUF47; TIGRFAM: TIGR00153 family protein.
       0.596
AGA56875.1
PFAM: Dienelactone hydrolase family.
       0.520
AGA56878.1
Phosphate/sulfate permease; PFAM: Phosphate transporter family.
  
    0.489
AGA58701.1
PFAM: Sporulation and spore germination.
  
     0.475
AGA56880.1
PFAM: Trp repressor protein; TIGRFAM: TrpR-related protein YerC/YecD.
 
    0.431
AGA58161.1
DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; Belongs to the FtsK/SpoIIIE/SftA family.
    
 
 0.423
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.409
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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