STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA57466.1Hypothetical protein; PFAM: SPFH domain / Band 7 family. (492 aa)    
Predicted Functional Partners:
AGA57465.1
Membrane-bound serine protease (ClpP class); PFAM: NfeD-like.
 
  
 0.992
AGA58484.1
Hypothetical protein; PFAM: SigmaW regulon antibacterial.
   
  
 0.526
AGA57464.1
DNA-binding domain-containing protein, AraC-type; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family.
  
    0.488
AGA57467.1
PFAM: Inosine-uridine preferring nucleoside hydrolase.
       0.436
AGA58483.1
Hypothetical protein.
   
    0.433
AGA57747.1
PFAM: Iron-containing alcohol dehydrogenase.
       0.432
AGA58485.1
Membrane-bound serine protease (ClpP class); PFAM: Serine dehydrogenase proteinase; NfeD-like.
   
    0.430
Your Current Organism:
Thermobacillus composti
NCBI taxonomy Id: 717605
Other names: T. composti KWC4, Thermobacillus composti DSM 18247, Thermobacillus composti KWC4, Thermobacillus composti str. KWC4, Thermobacillus composti strain KWC4, Thermobacillus sp. KWC4
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